2021 has been a very productive year for the Optics at Martinos Group! Here are the publications for the first half of the year:
- Zavriyev, A.I., Kaya, K., Farzam, P., Farzam, P.Y., Sunwoo, J., Jassar, A.S., Sundt, T.M., Carp, S.A., Franceschini, M.A. & Qu, J.Z. The role of diffuse correlation spectroscopy and frequency-domain near-infrared spectroscopy in monitoring cerebral hemodynamics during hypothermic circulatory arrests. JTCVS Techniques 7: 161-177 (2021). https://doi.org/10.1016/j.xjtc.2021.01.023
- Wu, M.M., Chan, S.T., Mazumder, D., Tamborini, D., Stephens, K.A., Deng, B., Farzam, P., Chu, Y., Franceschini, M.A., Qu, J.Z. & Carp, S.A. Improved accuracy of cerebral blood flow quantification in the presence of systemic physiology cross-talk using multi-layer Monte Carlo modeling. Neurophotonics 8(1): 015001 (2021). https://doi.org/10.1117/1.NPh.8.1.015001
- Spera, V., Sitnikova, T., Ward, M.J., Farzam, P., Hughes, J., Gazecki, S., Bui, E., Maiello, M., De Taboada, L., Hamblin, M.R., Franceschini, M.A. & Cassano, P. Pilot Study on Dose-Dependent Effects of Transcranial Photobiomodulation on Brain Electrical Oscillations: A Potential Therapeutic Target in Alzheimer’s Disease. Journal of Alzheimer’s Disease vol. Pre-press, no. Pre-press, pp. 1-18 (2021). DOI: 10.3233/JAD-210058
- Wu, K.C., Sunwoo, J., Sheriff, F., Farzam, P., Farzam, P.Y., Orihuela-Espina, F., LaRose, S.L., Monk, A.D., Aziz-Sultan, M.A., Patel, N., Vaitkevicius, H. & Franceschini, M.A. Validation of diffuse correlation spectroscopy measures of critical closing pressure against transcranial Doppler ultrasound in stroke patients. Journal of Biomedical Optics 26(3): 036008 (2021). https://doi.org/10.1117/1.JBO.26.3.036008
- Yücel, M.A., Lühmann, A.V., Scholkmann, F., Gervain, J., Dan, I., Ayaz, H., Boas, D.A., Cooper, R.J., Culver, J., Elwell, C.E., Eggebrecht, A., Franceschini, M.A., Grova, C., Homae, F., Lesage, F., Obrig, H., Tachtsidis, I., Tak, S., Tong, Y., Torricelli, A., Wabnitz, H. & Wolf, M. Best practices for fNIRS publications. Neurophotonics 8(1): 012101 (2021). https://doi.org/10.1117/1.NPh.8.1.012101
- Peter, L., Alexander, D.C., Magnain, C. & Iglesias, J.E. Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. Cornell University Computer Science > Computer Vision and Pattern Recognition. arXiv:2104.01217
- Chang, S., Varadarajan, D., Yang, J., Chen, I.A., Kura, S., Magnain, C., Augustinack, J.C., Fischl, B., Douglas N. Greve, D.N., Boas D.A. & Wang, H. Scalable mapping of myelin and neuron density in the human brain with micrometer resolution. bioRxiv doi: https://doi.org/10.1101/2021.05.13.444005
- Mächler, P., Broggini, T., Mateo, C., Thunemann, M., Fomin-Thunemann, N., Doran, P.R., Sencan, I., Kilic, K., Desjardins, M., Uhlirova, H., Yaseen, M.A., Boas, D.A., Linninger, A.A., Vergassola, M., Yu, X., Lewis, L.D., Polimeni, J.R., Rosen, B.R., Sakadžić, S., Buxton, R.B., Lauritzen, M., Kleinfeld, D. & Devor, A. A suite of neurophotonic tools to underpin the contribution of internal brain states in fMRI. Current Opinion in Biomedical Engineering 18: 100273 (2021). https://doi.org/10.1016/j.cobme.2021.100273
- Aykan, S.A., Xie, H., Lai, J.H., Zheng, Y., Chung, D.Y., Kura,S., Anzabi, M., Sugimoto, K., McAllister, L.M., Yaseen, M.A., Boas, D.A., Whalen, M.J., Sakadzic, S. & Ayata, C. Focal Subcortical White Matter Lesions Disrupt Resting State Cortical Interhemispheric Functional Connectivity in Mice. Cerebral Cortex 2021;, bhab134, https://doi.org/10.1093/cercor/bhab134
- Chung, D.Y., Oka, F., Jin, G., Harriott, A., Kura, S., Aykan, S.A., Qin, T., Edmiston, W.J., Lee, H., Yaseen, M.A., Sakadžić, S., Boas, D.A., Whalen, M.J. & Ayata, C. Subarachnoid hemorrhage leads to early and persistent functional connectivity and behavioral changes in mice. Journal of Cerebral Blood Flow & Metabolism 41(5): 975–985 (2021). https://doi.org/10.1177/0271678X20940152
- Lo, E.H., Albers, G.W., Dichgans, M., Donnan, G., Esposito, E., Foster, R., Howells, D.W., Huang, Y., Ji, X., Klerman, E.B., Lee, S., Li, W., Liebeskind, D.S., Lizasoain, I., Mandeville, E.T., Moro, M.A., Ning, M., Ray, D., Sakadžić, S., Saver, J.L., Scheer, F.A., Selim, M., Tiedt, S., Zhang, F. & Buchan, A.M. Circadian Biology and Stroke. Stroke 52(6): 2180-2190 (2021). doi: 10.1161/STROKEAHA.120.031742.
- Celaya-Alcala, J.T, Lee, G.V, Smith, A.F, Li, B., Sakadžić, S., Boas, D.A. & Secomb, T.W. Simulation of oxygen transport and estimation of tissue perfusion in extensive microvascular networks: Application to cerebral cortex. Journal of Cerebral Blood Flow & Metabolism 41(3): 656-669 (2021). doi: 10.1177/0271678X20927100.
- Bordoni, L., Li, B., Kura, S., Boas, D.A., Sakadžić, S., Østergaard, L., Frische, S. & Gutiérrez-Jiménez, E. Quantification of Capillary Perfusion in an Animal Model of Acute Intracranial Hypertension. Journal of Neurotrauma 38 (4): 446-454 (2021). https://doi.org/10.1089/neu.2019.6901
- Tahir, W., Kura, S., Zhu, J., Cheng, X., Damseh, R., Tadesse, F., Seibel, A., Lee, B.S., Lesage, F., Sakadžic, S., Boas, D.A. & Tian, L. Anatomical Modeling of Brain Vasculature in Two-Photon Microscopy by Generalizable Deep Learning. AAAS BME Frontiers Volume 2021, Article ID 8620932, 12 pages https://doi.org/10.34133/2021/8620932
- Anzabi, M., Li, B., Wang, H., Kura, S., Sakadžić, S., Boas, D.A., Østergaard, L. & Ayata, C. Optical coherence tomography of arteriolar diameter and capillary perfusion during spreading depolarizations. Journal of Cerebral Blood Flow & Metabolism 2021 Feb 16:271678X21994013. doi: 10.1177/0271678X21994013.