Publications

  1. Yang, Jiarui, et al. “Volumetric characterization of microvasculature in ex vivo human brain samples by serial sectioning optical coherence tomography.” IEEE Transactions on Biomedical Engineering (2022).
  2. Varadarajan, Divya, et al. “A novel algorithm for multiplicative speckle noise reduction in ex vivo human brain OCT images.” NeuroImage (2022): 119304.
  3. Chang, Shuaibin, et al. “Scalable mapping of myelin and neuron density in the human brain with micrometer resolution.” Scientific reports 12.1 (2022): 1-11.
  4. Oltmer, Jan, et al. “Quantitative and histologically validated measures of the entorhinal subfields in ex vivo MRI.” Brain Communications 4.3 (2022): fcac074.
  5. Liu, Chao J., et al. “Refractive-index matching enhanced polarization sensitive optical coherence tomography quantification in human brain tissue.” Biomedical optics express 13.1 (2022): 358-372.
  6. Peter, L., Alexander, D. C., Magnain, C., & Iglesias, J. E. (2021). Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms. IEEE Transactions on Medical Imaging, 40(8), 2053-2065.
  7. Magnain, C., Augustinack, J. C., Boas, D., Fischl, B., Akkin, T., Konukoglu, E., & Wang, H. (2020). Human brain imaging by optical coherence tomography. In Handbook of Neurophotonics (pp. 399-438). CRC Press.
  8. L-M.Terrier, N. Hadjikhani, S. Velut, C. Magnain, A. Amelot, F. Bernard, L. Zöllei and C Destrieux, “The trigeminal system: The meningovascular complex- A review”, J Anat., 2021.
  9. Yang, I.A. Chen, S. Chang, J. Tang, B. Lee, K. Kılıç, S. Sunil, H. Wang, D. Varadarajan, C. Magnain, S. Chen, I. Costantini, F. Pavone, B. Fischl and D.A. Boas ,“Improving the characterization of ex vivo human brain optical properties using high numerical aperture optical coherence tomography by spatially constraining the confocal parameters”,Neurophotonics, 7(4), 045005, 2020.
  10. Jones, G. Grisot, J.C. Augustinack, C. Magnain, D.A. Boas, B. Fischl, H. Wang and A. Yendiki, “Insight into the fundamental trade-offs of diffusion MRI from polarization-sensitive optical coherence tomography in ex vivo human brain”,NeuroImage, 214, 116704, 2020.
  11. C. Magnain, J. C. Augustinack, L. S. Tirrell, M. Fogarty, M. P. Frosch, D. A. Boas, B. Fischl and K. S. Rockland, “Colocalization of neurons in optical coherence microscopy and Nissl-stained histology in Brodmann’s area 32 and area 21”, Brain Structure And Function vol. 224:351-362, 2019.
  12. H. Wang, C. Magnain, R. Wang, J. Dubb, A. Varjabedian, L. S. Tirrell, A. Stevens, J. C. Augustinack, E. Konukoglu, I. Aganj, M. P. Frosch, J. D. Schmahmann, B. Fischl and D. A. Boas, “as-PSOCT: Volumetric microscopic imaging of human brain architecture and connectivity,” NeuroImage, (2018), doi: 10.1016/j.neuroimage.2017.10.012. Link
  13. H. Wang, C. Magnain, R. Wang, S. Sakadzić, B. Fischl and D. A. Boas, “Characterizing the optical properties of human brain tissue with high numerical aperture optical coherence tomography,” Biomedical Optics Express 8(12), pp. 5617-5636, 2017. Link
  14. H. Wang, T. Akkin, C. Magnain, R. Wang, J. Dubb, W. J. Kostis, M. A. Yaseen, A. Cramer, S. Sakadzić and D. A. Boas, “Polarization sensitive optical coherence microscopy for brain imaging,” Opt. Lett. 41(10):22132216 (2016). Link
  15. C. Magnain, H. Wang, S. Sakadzic, B. Fischl and D. A. Boas, “En face speckle reduction in optical coherence microscopy by frequency compounding,” Opt. Lett. 41(9):19251928 (2016). Link
  16. C. Wachinger, P. Golland, C. Magnain, B. Fischl and M. Reuter, “Multi-modal robust inverse-consistent linear registration,” Human Brain Mapping, vol. 36, 13651380, 2015. Link
  17. C. Magnain, J. C. Augustinack, E. Konukoglu, M. Frosch, A. Varjabedian, N. Garcia, V. Wedeen, D. Boas and B. Fischl, “Optical coherence tomography visualizes neurons in entorhinal cortex,” Neurophotonics, vol. 2, no, 1, 0154004, 2015. Link
  18. C. Magnain, A. Castel, T. Boucneau, M. Simonutti, I. Ferezou, A. Rancillac, T. Vitalis, J. A. Sahel, M. Paques and M. Atlan, “Holographic laser Doppler imaging of microvascular blood flow,” J. Opt. Soc. Am. A, vol. 31, no. 12, pp. 2723-2735, 2014. Link
  19. C. Magnain, J. C. Augustinack, M. Reuter, C. Wachinger, M. Frosch, T. Ragan, T. Akkiin, V. Weeden, D. Boas and B. Fischl, “Blockface histology with optical coherence tomography: a comparison with Nissl staining,” NeuroImage, vol. 84, pp. 524-533, 2014. Link
  20. J. C. Augustinack, C. Magnain, M. Reuter, A. J. W. van der Kouwe, D. Boas and B. Fischl, “MRI parcellateion of ex vivo medial temporal lobe,” NeuroImage, vol. 93, pp. 252-259, 2014. Link
  21. N. Miyamoto, L.-D. D. Phan, K. Hayakawa, T. Matsuzaki, J. H. Seo, C. Magnain, C. Ayata, K.-W. Kim, D. Boas, E. H. Lo and K. Arai, “Age-related decline in oligodendrogenesis retards white matter repair in mice,” Stroke, vol. 44, no. 11, pp. 2573-2578, 2013. Link
  22. M. Simonutti, M. Paques, J.A. Sahel, M. Gross, B. Samson, C. Magnain and M. Atlan, “Holographic laser Doppler ophtalmoscopy,” Opt. Lett., vol. 35, no. 12, pp. 1941-1943, 2010. Link
  23. M. Elias, C. Magnain and J.M. Frigerio, “Contribution of surface state characterization to studies of works of art,” Appl. Opt., vol. 49, no. 11, pp. 2151-2160, 2010. Link
  24. C. Magnain, M. Elias and J.-M. Frigerio, “Influence of the artistic techniques on the visual appearance of complexions in art,” SPIE Europe Optical Metrology, International Society for Optics and Photonics, p. 739108, 2009. Link
  25. M. Elias, C. Magnain, C. Barthou, A. Nevin, D. Comelli and G. Valentini, “UV-fluorescence spectroscopy for identification of varnishes in works of art: influence of the underlayer on the emission spectrum,” SPIE Europe Optical Metrology, International Society for Optics and Photonics, p. 739104, 2009. Link
  26. C. Magnain, M. Elias and J.M. Frigerio,”Skin color modeling using the radiative transfer equation solved by the auxiliary function method, II: inverse problem,” J. Opt. Soc. Am. A, vol. 25, no. 7, pp. 1737-1748, 2008. Link

  27. C. Magnain, M. Elias and J.M. Frigerio, “Skin color modeling using the radiative transfer equation solved by the auxiliary function method,” J. Opt. Soc. Am. A, vol. 24, no. 8, pp. 2169-2205, 2007. Link